Detailed information of SNP:
|
SNP ID:
sf0727790564(Gbrowse)
Chromosome: chr07 Position: 27790564 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 53.74% | 46.26% |
| All Indica | 798 | 89.22% | 10.78% |
| All Japonica | 497 | 3.22% | 96.78% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 212 | 92.45% | 7.55% |
| Indica Intermediate | 211 | 75.83% | 24.17% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727790564 | A->T | LOC_Os07g46540(LOC_Os07g46540.1) | UTR_3_PRIME |