Detailed information of SNP:
|
SNP ID:
sf0727790837(Gbrowse)
Chromosome: chr07 Position: 27790837 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 73.15% | 26.85% |
| All Indica | 799 | 91.99% | 8.01% |
| All Japonica | 497 | 37.63% | 62.37% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 78.20% | 21.80% |
| Temperate Japonica | 335 | 29.25% | 70.75% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727790837 | C->T | LOC_Os07g46540(LOC_Os07g46540.1) | Non-Synonymous SNP |