Detailed information of SNP:
|
SNP ID:
sf0727792775(Gbrowse)
Chromosome: chr07 Position: 27792775 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 81.54% | 18.46% |
| All Indica | 799 | 96.37% | 3.63% |
| All Japonica | 497 | 68.41% | 31.59% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 74.93% | 25.07% |
| Tropical Japonica | 94 | 35.11% | 64.89% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727792775 | C->T | LOC_Os07g46540(LOC_Os07g46540.1) | Non-Synonymous SNP |