Detailed information of SNP:
|
SNP ID:
sf0727799865(Gbrowse)
Chromosome: chr07 Position: 27799865 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 81.66% | 18.34% |
| All Indica | 798 | 96.24% | 3.76% |
| All Japonica | 497 | 68.81% | 31.19% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 210 | 94.76% | 5.24% |
| Temperate Japonica | 335 | 75.82% | 24.18% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727799865 | C->G | LOC_Os07g46550(LOC_Os07g46550.1) | INTRON |
| sf0727799865 | C->G | LOC_Os07g46550(LOC_Os07g46550.1) | SNPs that disrupt splice sites |