Detailed information of SNP:
|
SNP ID:
sf0727800031(Gbrowse)
Chromosome: chr07 Position: 27800031 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 80.79% | 19.21% |
| All Indica | 799 | 96.37% | 3.63% |
| All Japonica | 496 | 66.53% | 33.47% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 72.24% | 27.76% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 67 | 83.58% | 16.42% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727800031 | T->A | LOC_Os07g46550(LOC_Os07g46550.1) | INTRON |