Detailed information of SNP:
|
SNP ID:
sf0727867348(Gbrowse)
Chromosome: chr07 Position: 27867348 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 76.96% | 23.04% |
| All Indica | 799 | 92.12% | 7.88% |
| All Japonica | 497 | 48.29% | 51.71% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 78.67% | 21.33% |
| Temperate Japonica | 335 | 29.55% | 70.45% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727867348 | T->G | INTERGENIC | None |