Detailed information of SNP:
|
SNP ID:
sf0727896236(Gbrowse)
Chromosome: chr07 Position: 27896236 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1343 | 98.51% | 1.49% |
| All Indica | 781 | 100.00% | 0.00% |
| All Japonica | 440 | 95.45% | 4.55% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 196 | 100.00% | 0.00% |
| Temperate Japonica | 283 | 92.93% | 7.07% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 63 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727896236 | C->T | INTERGENIC | None |