Detailed information of SNP:
|
SNP ID:
sf0727912454(Gbrowse)
Chromosome: chr07 Position: 27912454 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1342 | 88.08% | 11.92% |
| All Indica | 782 | 99.23% | 0.77% |
| All Japonica | 439 | 66.29% | 33.71% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 99.19% | 0.81% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 200 | 99.50% | 0.50% |
| Temperate Japonica | 280 | 53.57% | 46.43% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 65 | 78.46% | 21.54% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727912454 | A->C | INTERGENIC | None |