Detailed information of SNP:
|
SNP ID:
sf0727913676(Gbrowse)
Chromosome: chr07 Position: 27913676 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 60.68% | 39.32% |
| All Indica | 799 | 60.45% | 39.55% |
| All Japonica | 497 | 68.01% | 31.99% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 375 | 48.27% | 51.73% |
| Indica II | 213 | 74.18% | 25.82% |
| Indica Intermediate | 211 | 68.25% | 31.75% |
| Temperate Japonica | 335 | 91.34% | 8.66% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727913676 | T->C | INTERGENIC | None |