Detailed information of SNP:
|
SNP ID:
sf0727935142(Gbrowse)
Chromosome: chr07 Position: 27935142 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 69.66% | 30.34% |
| All Indica | 794 | 50.13% | 49.87% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 57.60% | 42.40% |
| Indica II | 211 | 32.23% | 67.77% |
| Indica Intermediate | 208 | 54.81% | 45.19% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727935142 | G->A | INTERGENIC | None |