Detailed information of SNP:
|
SNP ID:
sf0727981904(Gbrowse)
Chromosome: chr07 Position: 27981904 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 69.50% | 30.50% |
| All Indica | 793 | 48.80% | 51.20% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 57.10% | 42.90% |
| Indica II | 209 | 31.58% | 68.42% |
| Indica Intermediate | 211 | 51.18% | 48.82% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727981904 | C->T | LOC_Os07g46810(LOC_Os07g46810.1) | UTR_3_PRIME |