Detailed information of SNP:
|
SNP ID:
sf0727999324(Gbrowse)
Chromosome: chr07 Position: 27999324 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1338 | 98.28% | 1.72% |
| All Indica | 767 | 99.74% | 0.26% |
| All Japonica | 453 | 95.36% | 4.64% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 358 | 100.00% | 0.00% |
| Indica II | 207 | 99.52% | 0.48% |
| Indica Intermediate | 202 | 99.50% | 0.50% |
| Temperate Japonica | 314 | 99.04% | 0.96% |
| Tropical Japonica | 79 | 94.94% | 5.06% |
| Japonica Intermediate | 60 | 76.67% | 23.33% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727999324 | A->G | INTERGENIC | None |