Detailed information of SNP:
|
SNP ID:
sf0728018966(Gbrowse)
Chromosome: chr07 Position: 28018966 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 85.85% | 14.15% |
| All Indica | 795 | 79.37% | 20.63% |
| All Japonica | 496 | 98.39% | 1.61% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 372 | 81.45% | 18.55% |
| Indica II | 213 | 78.87% | 21.13% |
| Indica Intermediate | 210 | 76.19% | 23.81% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0728018966 | G->A | INTERGENIC | None |