Detailed information of SNP:
|
SNP ID:
sf0728020026(Gbrowse)
Chromosome: chr07 Position: 28020026 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 71.84% | 28.16% |
| All Indica | 791 | 51.71% | 48.29% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 58.11% | 41.89% |
| Indica II | 213 | 35.68% | 64.32% |
| Indica Intermediate | 208 | 56.73% | 43.27% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0728020026 | C->T | LOC_Os07g46870(LOC_Os07g46870.1) | Synonymous |