Detailed information of SNP:
|
SNP ID:
sf0728043661(Gbrowse)
Chromosome: chr07 Position: 28043661 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1370 | 95.11% | 4.89% |
| All Indica | 766 | 91.78% | 8.22% |
| All Japonica | 488 | 99.59% | 0.41% |
| Aus | 63 | 100.00% | 0.00% |
| Indica I | 350 | 92.86% | 7.14% |
| Indica II | 210 | 88.10% | 11.90% |
| Indica Intermediate | 206 | 93.69% | 6.31% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 89 | 98.88% | 1.12% |
| Japonica Intermediate | 65 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0728043661 | G->A | INTERGENIC | None |