Detailed information of SNP:
|
SNP ID:
sf0728157148(Gbrowse)
Chromosome: chr07 Position: 28157148 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1323 | 97.05% | 2.95% |
| All Indica | 757 | 100.00% | 0.00% |
| All Japonica | 448 | 91.74% | 8.26% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 352 | 100.00% | 0.00% |
| Indica II | 207 | 100.00% | 0.00% |
| Indica Intermediate | 198 | 100.00% | 0.00% |
| Temperate Japonica | 300 | 96.00% | 4.00% |
| Tropical Japonica | 83 | 96.39% | 3.61% |
| Japonica Intermediate | 65 | 66.15% | 33.85% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0728157148 | C->T | INTERGENIC | None |