Detailed information of SNP:
|
SNP ID:
sf0728244851(Gbrowse)
Chromosome: chr07 Position: 28244851 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 58.50% | 41.50% |
| All Indica | 799 | 45.18% | 54.82% |
| All Japonica | 496 | 79.03% | 20.97% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 375 | 55.73% | 44.27% |
| Indica II | 213 | 29.58% | 70.42% |
| Indica Intermediate | 211 | 42.18% | 57.82% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 94 | 25.53% | 74.47% |
| Japonica Intermediate | 67 | 79.10% | 20.90% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0728244851 | C->T | INTERGENIC | None |