Detailed information of SNP:
|
SNP ID:
sf0728264524(Gbrowse)
Chromosome: chr07 Position: 28264524 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1387 | 60.63% | 39.37% |
| All Indica | 787 | 44.60% | 55.40% |
| All Japonica | 478 | 83.05% | 16.95% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 64.03% | 35.97% |
| Indica II | 212 | 15.09% | 84.91% |
| Indica Intermediate | 208 | 40.38% | 59.62% |
| Temperate Japonica | 320 | 98.75% | 1.25% |
| Tropical Japonica | 92 | 28.26% | 71.74% |
| Japonica Intermediate | 66 | 83.33% | 16.67% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0728264524 | A->G | LOC_Os07g47284(LOC_Os07g47284.1) | INTRON |