Detailed information of SNP:
|
SNP ID:
sf0728302047(Gbrowse)
Chromosome: chr07 Position: 28302047 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 77.06% | 22.94% |
| All Indica | 797 | 70.26% | 29.74% |
| All Japonica | 497 | 85.11% | 14.89% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 86.60% | 13.40% |
| Indica II | 213 | 53.52% | 46.48% |
| Indica Intermediate | 211 | 58.29% | 41.71% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0728302047 | G->A | INTERGENIC | None |