Detailed information of SNP:
|
SNP ID:
sf0728384382(Gbrowse)
Chromosome: chr07 Position: 28384382 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 96.50% | 3.50% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 490 | 98.37% | 1.63% |
| Aus | 57 | 29.82% | 70.18% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 88 | 90.91% | 9.09% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0728384382 | T->A | INTERGENIC | None |