Detailed information of SNP:
|
SNP ID:
sf0728385762(Gbrowse)
Chromosome: chr07 Position: 28385762 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1403 | 72.99% | 27.01% |
| All Indica | 799 | 94.99% | 5.01% |
| All Japonica | 485 | 48.04% | 51.96% |
| Aus | 65 | 3.08% | 96.92% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 323 | 31.58% | 68.42% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0728385762 | G->T | INTERGENIC | None |