Detailed information of SNP:



SNP ID: sf0728385762(Gbrowse)

Chromosome: chr07

Position: 28385762
Major allele: T

Minor allele: G

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of G(minor allele)
All1403 72.99% 27.01%
All Indica799 94.99% 5.01%
All Japonica485 48.04% 51.96%
Aus65 3.08% 96.92%
Indica I375 95.20% 4.80%
Indica II213 97.65% 2.35%
Indica Intermediate211 91.94% 8.06%
Temperate Japonica323 31.58% 68.42%
Tropical Japonica94 86.17% 13.83%
Japonica Intermediate68 73.53% 26.47%
Group VI/Aromatic14 14.29% 85.71%
Intermediate40 70.00% 30.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0728385762 G->T INTERGENIC None