Detailed information of SNP:
|
SNP ID:
sf0728385866(Gbrowse)
Chromosome: chr07 Position: 28385866 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 80.58% | 19.42% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 488 | 58.61% | 41.39% |
| Aus | 64 | 3.12% | 96.88% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 326 | 46.32% | 53.68% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0728385866 | T->C | INTERGENIC | None |