Detailed information of SNP:
|
SNP ID:
sf0728387711(Gbrowse)
Chromosome: chr07 Position: 28387711 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 78.49% | 21.51% |
| All Indica | 798 | 98.50% | 1.50% |
| All Japonica | 495 | 55.56% | 44.44% |
| Aus | 65 | 3.08% | 96.92% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 333 | 42.94% | 57.06% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0728387711 | T->C | INTERGENIC | None |