Detailed information of SNP:
|
SNP ID:
sf0728389093(Gbrowse)
Chromosome: chr07 Position: 28389093 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 75.02% | 24.98% |
| All Indica | 799 | 95.24% | 4.76% |
| All Japonica | 497 | 41.45% | 58.55% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 24.48% | 75.52% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0728389093 | A->G | INTERGENIC | None |