Detailed information of SNP:
|
SNP ID:
sf0728415810(Gbrowse)
Chromosome: chr07 Position: 28415810 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 51.38% | 48.62% |
| All Indica | 797 | 54.08% | 45.92% |
| All Japonica | 497 | 52.92% | 47.08% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 374 | 54.01% | 45.99% |
| Indica II | 212 | 50.47% | 49.53% |
| Indica Intermediate | 211 | 57.82% | 42.18% |
| Temperate Japonica | 335 | 66.87% | 33.13% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0728415810 | A->G | INTERGENIC | None |