Detailed information of SNP:
|
SNP ID:
sf0728427958(Gbrowse)
Chromosome: chr07 Position: 28427958 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 56.75% | 43.25% |
| All Indica | 799 | 96.50% | 3.50% |
| All Japonica | 496 | 1.01% | 98.99% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 39 | 41.03% | 58.97% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0728427958 | A->G | LOC_Os07g47530(LOC_Os07g47530.2) | Synonymous |
| sf0728427958 | A->G | LOC_Os07g47530(LOC_Os07g47530.1) | Synonymous |