Detailed information of SNP:
|
SNP ID:
sf0728453415(Gbrowse)
Chromosome: chr07 Position: 28453415 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 80.83% | 19.17% |
| All Indica | 799 | 98.37% | 1.63% |
| All Japonica | 497 | 62.58% | 37.42% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 80.60% | 19.40% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0728453415 | A->T | LOC_Os07g47590(LOC_Os07g47590.3) | INTRON |
| sf0728453415 | A->T | LOC_Os07g47590(LOC_Os07g47590.1) | INTRON |
| sf0728453415 | A->T | LOC_Os07g47590(LOC_Os07g47590.2) | INTRON |