Detailed information of SNP:
|
SNP ID:
sf0728455469(Gbrowse)
Chromosome: chr07 Position: 28455469 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 94.85% | 5.15% |
| All Indica | 799 | 90.86% | 9.14% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0728455469 | G->C | LOC_Os07g47590(LOC_Os07g47590.3) | UTR_5_PRIME |
| sf0728455469 | G->C | LOC_Os07g47590(LOC_Os07g47590.1) | UTR_5_PRIME |
| sf0728455469 | G->C | LOC_Os07g47590(LOC_Os07g47590.2) | UTR_5_PRIME |