Detailed information of SNP:
|
SNP ID:
sf0728461055(Gbrowse)
Chromosome: chr07 Position: 28461055 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 56.18% | 43.82% |
| All Indica | 799 | 95.49% | 4.51% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 35.00% | 65.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0728461055 | A->G | INTERGENIC | None |