Detailed information of SNP:
|
SNP ID:
sf0728550625(Gbrowse)
Chromosome: chr07 Position: 28550625 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 73.04% | 26.96% |
| All Indica | 798 | 97.62% | 2.38% |
| All Japonica | 497 | 31.99% | 68.01% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 11.64% | 88.36% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0728550625 | T->G | INTERGENIC | None |