Detailed information of SNP:
|
SNP ID:
sf0728663033(Gbrowse)
Chromosome: chr07 Position: 28663033 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1242 | 90.98% | 9.02% |
| All Indica | 628 | 82.32% | 17.68% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 262 | 60.31% | 39.69% |
| Indica II | 188 | 99.47% | 0.53% |
| Indica Intermediate | 178 | 96.63% | 3.37% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 38 | 97.37% | 2.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0728663033 | C->T | LOC_Os07g48000(LOC_Os07g48000.1) | INTRON |