Detailed information of SNP:
|
SNP ID:
sf0728681239(Gbrowse)
Chromosome: chr07 Position: 28681239 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1336 | 81.44% | 18.56% |
| All Indica | 797 | 97.74% | 2.26% |
| All Japonica | 417 | 46.52% | 53.48% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 209 | 95.69% | 4.31% |
| Temperate Japonica | 262 | 24.43% | 75.57% |
| Tropical Japonica | 91 | 94.51% | 5.49% |
| Japonica Intermediate | 64 | 68.75% | 31.25% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0728681239 | A->G | INTERGENIC | None |