Detailed information of SNP:
|
SNP ID:
sf0728692768(Gbrowse)
Chromosome: chr07 Position: 28692768 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1137 | 95.87% | 4.13% |
| All Indica | 542 | 91.70% | 8.30% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 47 | 100.00% | 0.00% |
| Indica I | 250 | 90.00% | 10.00% |
| Indica II | 132 | 90.91% | 9.09% |
| Indica Intermediate | 160 | 95.00% | 5.00% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 97.37% | 2.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0728692768 | C->T | LOC_Os07g48070(LOC_Os07g48070.1) | INTRON |