Detailed information of SNP:
|
SNP ID:
sf0728751236(Gbrowse)
Chromosome: chr07 Position: 28751236 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 62.92% | 37.08% |
| All Indica | 797 | 56.34% | 43.66% |
| All Japonica | 495 | 69.29% | 30.71% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 67.11% | 32.89% |
| Indica II | 213 | 42.25% | 57.75% |
| Indica Intermediate | 210 | 51.43% | 48.57% |
| Temperate Japonica | 335 | 82.99% | 17.01% |
| Tropical Japonica | 93 | 32.26% | 67.74% |
| Japonica Intermediate | 67 | 52.24% | 47.76% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0728751236 | C->T | INTERGENIC | None |