Detailed information of SNP:
|
SNP ID:
sf0728761573(Gbrowse)
Chromosome: chr07 Position: 28761573 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 79.12% | 20.88% |
| All Indica | 794 | 64.74% | 35.26% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 61.33% | 38.67% |
| Indica II | 210 | 63.81% | 36.19% |
| Indica Intermediate | 209 | 71.77% | 28.23% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0728761573 | A->T | INTERGENIC | None |