Detailed information of SNP:
|
SNP ID:
sf0728785309(Gbrowse)
Chromosome: chr07 Position: 28785309 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 57.96% | 42.04% |
| All Indica | 791 | 92.04% | 7.96% |
| All Japonica | 480 | 2.50% | 97.50% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 374 | 94.92% | 5.08% |
| Indica II | 206 | 92.23% | 7.77% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 324 | 1.54% | 98.46% |
| Tropical Japonica | 90 | 3.33% | 96.67% |
| Japonica Intermediate | 66 | 6.06% | 93.94% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 28.57% | 71.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0728785309 | A->T | INTERGENIC | None |