Detailed information of SNP:
|
SNP ID:
sf0728807539(Gbrowse)
Chromosome: chr07 Position: 28807539 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1331 | 84.67% | 15.33% |
| All Indica | 794 | 95.09% | 4.91% |
| All Japonica | 415 | 65.06% | 34.94% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 210 | 92.38% | 7.62% |
| Indica Intermediate | 210 | 90.00% | 10.00% |
| Temperate Japonica | 277 | 81.23% | 18.77% |
| Tropical Japonica | 82 | 20.73% | 79.27% |
| Japonica Intermediate | 56 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0728807539 | C->A | INTERGENIC | None |