Detailed information of SNP:
|
SNP ID:
sf0728823521(Gbrowse)
Chromosome: chr07 Position: 28823521 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1382 | 81.40% | 18.60% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 463 | 49.89% | 50.11% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 307 | 35.18% | 64.82% |
| Tropical Japonica | 89 | 88.76% | 11.24% |
| Japonica Intermediate | 67 | 65.67% | 34.33% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0728823521 | G->C | INTERGENIC | None |