Detailed information of SNP:
|
SNP ID:
sf0728869682(Gbrowse)
Chromosome: chr07 Position: 28869682 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 53.14% | 46.86% |
| All Indica | 799 | 90.24% | 9.76% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0728869682 | G->A | INTERGENIC | None |