Detailed information of SNP:
|
SNP ID:
sf0728874751(Gbrowse)
Chromosome: chr07 Position: 28874751 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 59.89% | 40.11% |
| All Indica | 799 | 95.37% | 4.63% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 39 | 43.59% | 56.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0728874751 | T->C | INTERGENIC | None |