Detailed information of SNP:
|
SNP ID:
sf0728879413(Gbrowse)
Chromosome: chr07 Position: 28879413 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 67.28% | 32.72% |
| All Indica | 799 | 50.56% | 49.44% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 375 | 50.40% | 49.60% |
| Indica II | 213 | 65.26% | 34.74% |
| Indica Intermediate | 211 | 36.02% | 63.98% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0728879413 | T->C | INTERGENIC | None |