Detailed information of SNP:
|
SNP ID:
sf0728883030(Gbrowse)
Chromosome: chr07 Position: 28883030 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1357 | 97.79% | 2.21% |
| All Indica | 797 | 99.87% | 0.13% |
| All Japonica | 440 | 93.86% | 6.14% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 291 | 91.41% | 8.59% |
| Tropical Japonica | 86 | 100.00% | 0.00% |
| Japonica Intermediate | 63 | 96.83% | 3.17% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0728883030 | C->T | LOC_Os07g48330(LOC_Os07g48330.1) | INTRON |