Detailed information of SNP:
|
SNP ID:
sf0728886305(Gbrowse)
Chromosome: chr07 Position: 28886305 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1386 | 89.11% | 10.89% |
| All Indica | 798 | 98.12% | 1.88% |
| All Japonica | 465 | 75.27% | 24.73% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 313 | 92.97% | 7.03% |
| Tropical Japonica | 88 | 31.82% | 68.18% |
| Japonica Intermediate | 64 | 48.44% | 51.56% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0728886305 | G->A | INTERGENIC | None |