Detailed information of SNP:
|
SNP ID:
sf0728891753(Gbrowse)
Chromosome: chr07 Position: 28891753 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1341 | 95.97% | 4.03% |
| All Indica | 798 | 98.37% | 1.63% |
| All Japonica | 421 | 91.69% | 8.31% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 287 | 100.00% | 0.00% |
| Tropical Japonica | 77 | 58.44% | 41.56% |
| Japonica Intermediate | 57 | 94.74% | 5.26% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0728891753 | A->C | INTERGENIC | None |