Detailed information of SNP:
|
SNP ID:
sf0728896321(Gbrowse)
Chromosome: chr07 Position: 28896321 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 73.87% | 26.13% |
| All Indica | 797 | 56.59% | 43.41% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 374 | 57.49% | 42.51% |
| Indica II | 212 | 65.09% | 34.91% |
| Indica Intermediate | 211 | 46.45% | 53.55% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0728896321 | A->G | LOC_Os07g48350(LOC_Os07g48350.1) | INTRON |