Detailed information of SNP:
|
SNP ID:
sf0728913154(Gbrowse)
Chromosome: chr07 Position: 28913154 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 62.03% | 37.97% |
| All Indica | 797 | 97.11% | 2.89% |
| All Japonica | 497 | 5.63% | 94.37% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 212 | 94.81% | 5.19% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0728913154 | T->C | INTERGENIC | None |