Detailed information of SNP:
|
SNP ID:
sf0728917014(Gbrowse)
Chromosome: chr07 Position: 28917014 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1404 | 75.00% | 25.00% |
| All Indica | 788 | 58.38% | 41.62% |
| All Japonica | 494 | 99.60% | 0.40% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 374 | 58.29% | 41.71% |
| Indica II | 204 | 70.10% | 29.90% |
| Indica Intermediate | 210 | 47.14% | 52.86% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 98.90% | 1.10% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0728917014 | T->G | LOC_Os07g48380(LOC_Os07g48380.1) | INTRON |