Detailed information of SNP:
|
SNP ID:
sf0728917656(Gbrowse)
Chromosome: chr07 Position: 28917656 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 74.03% | 25.97% |
| All Indica | 798 | 56.77% | 43.23% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 374 | 58.02% | 41.98% |
| Indica II | 213 | 65.26% | 34.74% |
| Indica Intermediate | 211 | 45.97% | 54.03% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0728917656 | G->A | INTERGENIC | None |