Detailed information of SNP:
|
SNP ID:
sf0728941016(Gbrowse)
Chromosome: chr07 Position: 28941016 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 62.00% | 38.00% |
| All Indica | 797 | 96.61% | 3.39% |
| All Japonica | 495 | 5.66% | 94.34% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 93.87% | 6.13% |
| Indica Intermediate | 210 | 93.81% | 6.19% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 92 | 8.70% | 91.30% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0728941016 | T->A | INTERGENIC | None |