Detailed information of SNP:
|
SNP ID:
sf0728960167(Gbrowse)
Chromosome: chr07 Position: 28960167 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 62.53% | 37.47% |
| All Indica | 798 | 46.12% | 53.88% |
| All Japonica | 497 | 94.37% | 5.63% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 374 | 53.74% | 46.26% |
| Indica II | 213 | 51.17% | 48.83% |
| Indica Intermediate | 211 | 27.49% | 72.51% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0728960167 | A->C | INTERGENIC | None |